Scribbles & Snippets
... of low and no utility ...

Categories

Latest Posts

Running Cromwell on AWS/Batch
- Posted: 2018-11-21.

Parallel mysql myisam repair
- Posted: 2018-11-21.

Does a TKI like Crizotinib kill tumor cells ?
- Posted: 2018-10-28.

Save Spotify to flac or mp3
- Posted: 2018-07-14.

Replace all symlinks by the original file
- Posted: 2018-03-02.

Tag Collection

GATK cotd spam SLURM Perl VMware line-end bibtex natbib preamble Image Rcran cromwell Batch apoptosis Remote Apache javascript NSCLC Literature Silverlight antialias torque/pbs python Cluster proftpd dos2unix FTP XFS NGS whitespace Recovery fancy spotify timer Headless Typesetting bioinformatics Linespacing Installation drmaa fuzzy match BASH CPAN telenet Ubuntu PHP terraform Password Yelo.tv api cloudformation LaTeX osd_cat Paired-End TrainOfThought windows levenshtein galaxy R docker todo.txt ExecOnCommand sudoers mpd NFS VMplayer tikz indent compress Searching Conky HPC AWS mysql

Log in

: User
: Password

All Entries On bioinformatics

A total of 3 entries were found. Click on the titles to read the posts.

  • Compress all fastq/vcf files in a storage tree with a single command (2013-03-06 - Geert Vandeweyer)

    this was my command of the day: \"Laughing\"

  • Creating GATK VQSR plots (2013-05-15 - Geert Vandeweyer)
    

    GATK provides nice plots on the gaussian distributions used by the variant quality recalibration tool. 
    

     
    

    However, coverting the R-scripts to the actual pdf plots proved n...
  • Running Cromwell on AWS/Batch (2018-11-21 - Geert Vandeweyer)
    

    Cromwell is one of the widely used workflow managers used in bioinformatics to run NGS analysis pipelines. Based on the WDL workflow language, it supports runnings tasks as regular scripts or as co...