Categories
Latest Posts
Running Cromwell on AWS/Batch
- Posted: 2018-11-21.
Parallel mysql myisam repair
- Posted: 2018-11-21.
Does a TKI like Crizotinib kill tumor cells ?
- Posted: 2018-10-28.
Save Spotify to flac or mp3
- Posted: 2018-07-14.
Replace all symlinks by the original file
- Posted: 2018-03-02.
Tag Collection
cotd CPAN Remote Conky Yelo.tv api cromwell NGS Linespacing NSCLC levenshtein terraform javascript natbib AWS Apache Image NFS indent torque/pbs preamble Ubuntu HPC timer LaTeX Paired-End Batch SLURM galaxy sudoers R fuzzy match antialias spotify VMplayer FTP compress spam Installation tikz fancy python drmaa Silverlight ExecOnCommand mysql cloudformation mpd Searching Headless GATK Cluster windows TrainOfThought bibtex bioinformatics XFS BASH telenet dos2unix line-end proftpd Rcran Literature whitespace Perl Recovery Typesetting Password VMware docker apoptosis PHP osd_cat todo.txt
Log in
All Entries On bioinformatics
A total of 3 entries were found. Click on the titles to read the posts.
- Compress all fastq/vcf files in a storage tree with a single command (2013-03-06 - Geert Vandeweyer)
this was my command of the day:
- Creating GATK VQSR plots (2013-05-15 - Geert Vandeweyer)
GATK provides nice plots on the gaussian distributions used by the variant quality recalibration tool.
However, coverting the R-scripts to the actual pdf plots proved n...
- Running Cromwell on AWS/Batch (2018-11-21 - Geert Vandeweyer)
Cromwell is one of the widely used workflow managers used in bioinformatics to run NGS analysis pipelines. Based on the WDL workflow language, it supports runnings tasks as regular scripts or as co...
- Creating GATK VQSR plots (2013-05-15 - Geert Vandeweyer)