All Entries On BASH

A total of 8 entries were found. Click on the titles to read the posts.

• General Queue Job to SLURM Cluster script (2011-06-16 - Geert Vandeweyer)
  

  This script allows you to queue jobs on a SLURM cluster without writing custom batch-scripts.  The script takes the provided command and functions as a generic batch-script.  It then laun...

• commandline timer with osd_cat output (2011-07-19 - Geert Vandeweyer)
  

  This simple timer script is executed from the commandline and takes two inputs. First a timer name, second a time indication in hours and/or minutes. 

  It sends output to the screen usi...

• General Queue Job to Torque/PBS Cluster Script (2012-07-18 - Geert Vandeweyer)
  

   

  Similar to the SLURM script I posted earlier, this script allows to submit jobs to PBS/torque without the need of writing qsub scripts. Just put the following script in your path as ...

• Compress all fastq/vcf files in a storage tree with a single command (2013-03-06 - Geert Vandeweyer)
  

  this was my command of the day: 

• Bash oneliner: Sum Disk Usage for files based on age (2014-06-13 - Geert Vandeweyer)
  

  Command of the day : Get a recursive disk usage for files older than a specified age. 

   

   

  find . ...

• warning setting locale failed (2016-03-31 - Geert Vandeweyer)
  

  The following two commands fix the messages upon ssh-login to remote hosts regarding missing locale variables.

   

  The Errors: 

• Recovery of corrupt XFS partition. (2016-05-10 - Geert Vandeweyer)
  

  We had a large XFS partition that went corrupt after a memory hardware failure. Containing 45Tb of data and no backups, we were eager to retrieve the data in some way. 

   

  ...

• Replace all symlinks by the original file (2018-03-02 - Geert Vandeweyer)
  

  This is a quick command to replace a folder with symlinks by the target files. The original files are not removed.